| apply_mapping_to_assignments | |
| apply_mapping_to_vector | |
| build_msm | |
| ergodic_trim | |
| ergodic_trim_indices | |
| estimate_rate_matrix | |
| estimate_transition_matrix | |
| get_count_matrix_from_assignments | |
| get_counts_from_traj | |
| invert_assignments | |
| log_likelihood | |
| mle_reversible_count_matrix | |
| permute_mat | |
| renumber_states | |
| tarjan | |
| trim_states |